Aims: High-intensity exercise acutely affects blood glucose levels. However, the relationship between exercise-induced glucose response, cardiorespiratory fitness, and cardiac autonomic function remains unclear. It is investigated whether an acute increase in glycamia after high-intensity exercise, specifically after cardiopulmonary exercise testing (CPET), is associated with VO₂max, heart rate variability (HRV), and glucose variability (CV) in the days following CPET. Methods: Using the BUT CGM dataset (n=47 healthy active adults), participants were categorized by their acute glucose response (ΔCGM) post-CPET into glycaemia increase group (ΔCGM > 2 mmol/L, n=20) and a no-increase group (ΔCGM ≤ 2 mmol/L, n=27). We analyzed VO₂max, short-term HRV (pre- and post-exercise), and nocturnal HRV across four nights (one before, three after CPET) alongside glycaemia variability (CV). Results: The increase group demonstrated significantly higher VO₂max (median 52.5 vs 45.0 ml/min/kg, p=0.009). This group exhibited higher resting SDNN: (84.7 vs 64.3 ms, p=0.022) and total power (908 vs 377 ms², p=0.010), greater post-exercise LF/HF ratio (7.9 vs 3.8, p=0.011), and higher nocturnal vagal tone (pNN50: 33.1 vs 23.2%, p=0.031). Notably, nocturnal HRV differences peaked two days post-exercise (total power: 1,602 vs 1,041 ms², p=0.007). CV was also significantly elevated in the increase group 1–2 days post-test (day 1: p=0.029; day 2 CV: p=0.012). Conclusion: An acute glycaemia increase >2 mmol/L after high intensity exercise is associated with higher cardiorespiratory fitness and robust autonomic modulation. However, it also identifies individuals experiencing prolonged metabolic and autonomic perturbations lasting up to 2 days post-exercise. Integrating CGM with HRV monitoring provides a multidimensional view of athletic performance and recovery status.