Fusion of Age-Residualized Engineered Sleep Features with Raw EEG for Predicting Future Cognitive Impairment

KABMUN CHA, JOUNG BAE CHOI, HYO YEON CHO
NLICA Inc


Abstract

Overnight polysomnography may contain physiological signatures of cognitive impairment diagnosed years later. Team NLICA developed a hybrid sleep-EEG system to predict a future cognitive impairment diagnosis 1-6 years after polysomnography. The large training set comprised 6,600 studies from three sources, and performance was assessed on the official hidden validation set from a source not represented in training.

The system combined an engineered-feature branch with a raw-EEG convolutional branch. The engineered branch represented each study using 281 candidate features spanning demographics, sleep-stage-specific EEG spectral characteristics, spindle activity, alpha peak frequency, slow oscillations, slow-oscillation-spindle coupling, and temporal descriptors from automated sleep annotations. Site-wise location-scale harmonization reduced inter-site distribution differences. Chronological age was removed as a direct predictor, and linear age trends in continuous features were estimated exclusively from negative-class training records and removed from all records to limit direct and linear age-related contributions to the engineered branch. Random-forest importance retained 200 features, which were standardized and used in a 30-model ensemble of XGBoost, random forests, and extremely randomized trees across 10 seeds. In parallel, a four-block one-dimensional convolutional network analyzed artifact-screened 30-s C3-M2, C4-M1, O1-M2, and O2-M1 EEG epochs from N2, N3, and rapid eye movement sleep. Epoch probabilities were averaged per patient. The two branches were combined by equal-weight late fusion, with engineered-only fallback when a CNN prediction was unavailable. A prespecified cohort-level top-decile rule generated binary predictions.

Across three leave-one-site-out folds on the training data, the mean and worst-site age-conditioned AUROCs were 0.694 and 0.654, respectively. On the official hidden validation set, the primary age-conditioned AUROC was 0.736; age-weighted AUROC, overall AUROC, AUPRC, and reward were 0.715, 0.835, 0.302, and 0.172, respectively. These findings support the cross-source predictive value of combining site-harmonized, age-residualized engineered sleep features with raw EEG for future cognitive impairment prediction.